First author publications

A countrywide survey of hrp2/3 deletions and kelch13 mutation co-occurrence in Ethiopia. Kamaliddin C*, Burke-Gaffney J, Ashraf S*, Castañeda-Mogollón D, Wijensinghe A, Pussegoda E, Mekasha Feleke S, Pillai DR. Journal of Infectious Diseases, 2024 PMID: 39083679 DOI: 10.1093/infdis/jiae373

Active case detection and treatment of malaria in pregnancy using LAMP technology (LAMPREG): a pragmatic randomized diagnostic outcomes trial-study protocol.

Gebresenbet RF*, Kamaliddin C*, Bekele ZM, Teferi M, Tegegne B, Yewhalaw D, Bayih AG, Pillai DR; LAMPREG Study Group. BMJ Open. 2022 Jul 18;12(7):e058397. PMID: 35851027 *co-first authors

The Role of Ultrasensitive Molecular Methods for Detecting Malaria-The Broader Perspective.

Kamaliddin C, Sutherland CJ, Houze S, Cottrell G, Briand V, Castaneda Mogollon D, Pillai DR. Clin Infect Dis. 2021 Sep 15;73(6):e1387-e1390. PMID: 33693719

Comprehensive Analysis of Transcript and Protein Relative Abundance During Blood Stages of Plasmodium falciparum Infection.

Kamaliddin C, Guillochon E, Salnot V, Rombaut D, Huguet S, Guillonneau F, Houzé S, Cot M, Deloron P, Argy N, Bertin GI. J Proteome Res. 2021 Feb 5;20(2):1206-1216. Epub 2021 Jan 21. PMID: 33475364

Evaluation of PCR To Monitor Plasmodium falciparum Treatment Efficacy in a Nonendemicity Setting.

Kamaliddin C#, Joste V, Hubert V, Kendjo E, Argy N, Houze S. J Clin Microbiol. 2019 Dec 23;58(1):e01080-19. Print 2019 Dec 23. PMID: 31666363 #corresponding author

Assessment of diagnostic methods for imported malaria in mainland France.

Kamaliddin C, Le Bouar M, Berry A, Fenneteau O, Gillet P, Godineau N, Candolfi E, Houzé S. Med Mal Infect. 2020 Mar;50(2):141-160. Epub 2019 Jul 31. PMID: 31375372

From genomic to LC-MS/MS evidence: Analysis of PfEMP1 in Benin malaria cases.

Kamaliddin C, Rombaut D, Guillochon E, Royo J, Ezinmegnon S, Agbota G, Huguet S, Guemouri S, Peirera C, Coppée R, Broussard C, Alao JM, Aubouy A, Guillonneau F, Deloron P, Bertin GI. PLoS One. 2019 Jun 28;14(6):e0218012. eCollection 2019. PMID: 31251748

Fluindione and falciparum malaria treated by atovaquone-proguanil.

Kamaliddin C, Joste V, Argy N, Houzé S. Therapie. 2018 Oct;73(5):445-447. Epub 2018 Apr 3. PMID: 29680373

PFI1785w: A highly conserved protein associated with pregnancy associated malaria.

Kamaliddin C, Salnot V, Leduc M, Ezinmegnon S, Broussard C, Fievet N, Deloron P, Guillonneau F, Bertin GI. PLoS One. 2017 Nov 9;12(11):e0187817. eCollection 2017. PMID: 29121643

Senior author publication

Infected erythrocytes and plasma proteomics reveal a specific protein signature of severe malaria. Fraering J, Salnot V, Gautier EF, Ezinmegnon S, Argy N, Peoch'h K, Manceau H, Alao J, Guillonneau F, Migot-Nabias F, Bertin GI*@, Kamaliddin C*@, NeuroCM consortium EMBO Mol Med. 2024 Feb; 16(2): 319–333. DOI: 10.1038/s44321-023-00010-0

Publications as a collaborator, or student supervision

Amplicon Deep Sequencing Reveals Multiple Genetic Events Lead to Treatment Failure with Atovaquone-Proguanil in Plasmodium falciparum.

Castañeda-Mogollón D, Toppings NB, Kamaliddin C, Lang R, Kuhn S, Pillai DR. Antimicrob Agents Chemother. 2023 Jun 15;67(6):e0170922. doi: 10.1128/aac.01709-22. Epub 2023 May 8. PMID: 37154745

Ultrasensitive Reverse Transcriptase Loop-Mediated Isothermal Amplification (US-LAMP)-Based Detection of Malaria Infection from Dried Blood Spots.

Mohon AN, Toppings N, Castañeda-Mogollón D, Kamaliddin C, Pillai DR. Methods Mol Biol. 2023;2621:325-337. doi: 10.1007/978-1-0716-2950-5_19. PMID: 37041454

Transcriptome Analysis of Plasmodium falciparum Isolates From Benin Reveals Specific Gene Expression Associated With Cerebral Malaria.

Guillochon E, Fraering J, Joste V, Kamaliddin C, Vianou B, Houzé L, Baudrin LG, Faucher JF, Aubouy A, Houzé S, Cot M, Argy N, Taboureau O, Bertin GI; NeuroCM group. J Infect Dis. 2022 Jun 15;225(12):2187-2196. PMID: 35255125

5WBF: a low-cost and straightforward whole blood filtration method suitable for whole-genome sequencing of Plasmodium falciparum clinical isolates.

Coppée R, Mama A, Sarrasin V, Kamaliddin C, Adoux L, Palazzo L, Ndam NT, Letourneur F, Ariey F, Houzé S, Clain J. Malar J. 2022 Feb 16;21(1):51. PMID: 35172825

SARS-CoV-2 variant detection with ADSSpike.

Castañeda-Mogollón D, Kamaliddin C, Fine L, Oberding LK, Pillai DR. Diagn Microbiol Infect Dis. 2022 Mar;102(3):115606. Epub 2021 Nov 23. PMID: 34963097

A metagenomics workflow for SARS-CoV-2 identification, co-pathogen detection, and overall diversity.

Castañeda-Mogollón D, Kamaliddin C, Oberding L, Liu Y, Mohon AN, Faridi RM, Khan F, Pillai DR. J Clin Virol. 2021 Dec;145:105025. Epub 2021 Nov 3. PMID: 34775144

Active case detection of malaria in pregnancy using loop-mediated amplification (LAMP): a pilot outcomes study in South West Ethiopia.

Tadesse G, Kamaliddin C, Doolan C, Amarasekara R, Legese R, Mohon AN, Cheaveau J, Yewhalaw D, Pillai DR. Malar J. 2020 Aug 27;19(1):305. PMID: 32854715

Changes in monocyte subsets are associated with clinical outcomes in severe malarial anaemia and cerebral malaria.

Royo J, Rahabi M, Kamaliddin C, Ezinmegnon S, Olagnier D, Authier H, Massougbodji A, Alao J, Ladipo Y, Deloron P, Bertin G, Pipy B, Coste A, Aubouy A. Sci Rep. 2019 Nov 26;9(1):17545. PMID: 31772386

Distinction of Plasmodium ovale wallikeri and Plasmodium ovale curtisi using quantitative Polymerase Chain Reaction with High Resolution Melting revelation.

Joste V, Kamaliddin C, Kendjo E, Hubert V, Argy N, Houzé S. Sci Rep. 2018 Jan 10;8(1):300. PMID: 29321578

Parasites Causing Cerebral Falciparum Malaria Bind Multiple Endothelial Receptors and Express EPCR and ICAM-1-Binding PfEMP1.

Tuikue Ndam N, Moussiliou A, Lavstsen T, Kamaliddin C, Jensen ATR, Mama A, Tahar R, Wang CW, Jespersen JS, Alao JM, Gamain B, Theander TG, Deloron P. J Infect Dis. 2017 Jun 15;215(12):1918-1925. PMID: 28863469

Influence of host factors and parasite biomass on the severity of imported Plasmodium falciparum malaria.

Argy N, Kendjo E, Augé-Courtoi C, Cojean S, Clain J, Houzé P, Thellier M, Hubert V, Deloron P, Houzé S; CNRP study group. PLoS One. 2017 Apr 14;12(4):e0175328. . eCollection 2017. PMID: 28410415

Foscarnet, zidovudine and dolutegravir combination efficacy and tolerability for late stage HIV salvage therapy: A case-series experience.

Delory T, Papot E, Rioux C, Charpentier C, Auge-Courtoi C, Michard F, Peytavin G, Descamps D, Matheron S, Yazdanpanah Y. J Med Virol. 2016 Jul;88(7):1204-10. Epub 2016 Jan 5. PMID: 26636432

Consortium associated publications

MALARIAGEN

Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples.

MalariaGEN; Abdel Hamid MM, Abdelraheem MH, Acheampong DO, Ahouidi A, Ali M, Almagro-Garcia J, Amambua-Ngwa A, Amaratunga C, Amenga-Etego L, Andagalu B, Anderson T, Andrianaranjaka V, Aniebo I, Aninagyei E, Ansah F, Ansah PO, Apinjoh T, Arnaldo P, Ashley E, Auburn S, Awandare GA, Ba H, Baraka V, Barry A, Bejon P, Bertin GI, Boni MF, Borrmann S, Bousema T, Bouyou-Akotet M, Branch O, Bull PC, Cheah H, Chindavongsa K, Chookajorn T, Chotivanich K, Claessens A, Conway DJ, Corredor V, Courtier E, Craig A, D'Alessandro U, Dama S, Day N, Denis B, Dhorda M, Diakite M, Djimde A, Dolecek C, Dondorp A, Doumbia S, Drakeley C, Drury E, Duffy P, Echeverry DF, Egwang TG, Enosse SMM, Erko B, Fairhurst RM, Faiz A, Fanello CA, Fleharty M, Forbes M, Fukuda M, Gamboa D, Ghansah A, Golassa L, Goncalves S, Harrison GLA, Healy SA, Hendry JA, Hernandez-Koutoucheva A, Hien TT, Hill CA, Hombhanje F, Hott A, Htut Y, Hussein M, Imwong M, Ishengoma D, Jackson SA, Jacob CG, Jeans J, Johnson KJ, Kamaliddin C et al, Wellcome Open Res. 2023 Jan 16;8:22. eCollection 2023. PMID: 36864926

An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples.

MalariaGEN; Ahouidi A, Ali M, Almagro-Garcia J, Amambua-Ngwa A, Amaratunga C, Amato R, Amenga-Etego L, Andagalu B, Anderson TJC, Andrianaranjaka V, Apinjoh T, Ariani C, Ashley EA, Auburn S, Awandare GA, Ba H, Baraka V, Barry AE, Bejon P, Bertin GI, Boni MF, Borrmann S, Bousema T, Branch O, Bull PC, Busby GBJ, Chookajorn T, Chotivanich K, Claessens A, Conway D, Craig A, D'Alessandro U, Dama S, Day NP, Denis B, Diakite M, Djimdé A, Dolecek C, Dondorp AM, Drakeley C, Drury E, Duffy P, Echeverry DF, Egwang TG, Erko B, Fairhurst RM, Faiz A, Fanello CA, Fukuda MM, Gamboa D, Ghansah A, Golassa L, Goncalves S, Hamilton WL, Harrison GLA, Hart L, Henrichs C, Hien TT, Hill CA, Hodgson A, Hubbart C, Imwong M, Ishengoma DS, Jackson SA, Jacob CG, Jeffery B, Jeffreys AE, Johnson KJ, Jyothi D, Kamaliddin C et al,
Wellcome Open Res. 2021 Jul 13;6:42. . eCollection 2021. PMID: 33824913